Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGI------------LMVIFIGIAIYVWRNLDRWKEILFT------ILGVVFGIFLFFKAPSLANWFMGVF----------
2P0P Chain:A ((1-126))
MASVERDETREHRIETEIIVDAEDKEERAMGWYYYLDDTLEFPFMGKWKKKSRKTSTIEEKTVEVLGMAPDDECLKDMYVEVADIGGKDDDVYTAKLSDIEAIDVDDDTQEAIADWLYWLARGYKF
General information:
TITO was launched using:
RESULT:
Template:
2P0P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71183 for 604 contacts (-117.9/contact) +
2D Compatibility (PS) -9795 + (NN) -872 + (LL) 0
1D Compatibility (HY) 3200 + (ID) 500
Total energy: -79150.0 ( -131.04 by residue)
QMean score : 0.109
(partial model without unconserved sides chains):
PDB file :
Tito_2P0P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P0P-query.scw
PDB file :
Tito_Scwrl_2P0P.pdb
: