Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MKEKPFNSEQMAF-----LEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISIL----------PLQKTEHHFVDFLNQDKH-----YAIIQRADKSI-----SSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIYVQ-------------------SHLEREVHIVNIAIYQQDNNPIASVS-----------IAAKLLNENK-------LVYEKRYKIVLSYLFDTPDFD------------YASMPKNPTGFKITRYSITEIAPTNRND |
| 4LDV Chain:A ((16-356)) | SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAETDE-----------VYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLN--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -26531 for 1369 contacts (-19.4/contact) +
2D Compatibility (PS) -24344 + (NN) 1269 + (LL) 1152
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -60204.0 ( -43.98 by residue)
QMean score : 0.149
|
|
|