Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MKRMLAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIAKHAKVLVCV--HTNDTIGYETLKN----LPGVEIARIDTNDTWARDFGAISVEN-HGVLECLDFGFNGWGLKYPSNLDNQVNFKLKHLGFLKHPLKTMPYILEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLNKDTIVYSACEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAVYNENQQRLPATYVNFLLCNNALIVPTYN-DPNDTLILETLRQHTP-LEVIGVDCNTLI--KQHGSLHCVTMQLY------------------------------------------------------------------------------------------------------------ |
| 4YTB Chain:A ((1-422)) | AFQETNPPAGPVRAIAEYERSAAVLVRYPFGI-------------PMELIKELAKNDKVITIVASESQKNTVITQYTQSGVNLSNCDFIIAKTDSYWTRDYTGWFAMYDTNKVGLVDFIYNRP-----RPNDDEF--PKYEAQYLGIEMFGMKLKQTGGNYMTDGYGSAVQSHIAYT---ENSSLSQAQVNQKMKDYLGITHHDVVQDP---NGEYINHVDCWGKYLAPNKILIRK-VPDNHPQHQALEDMAAYFAAQTCAWGTKYEVYRALATN----------EQPYTNSLILNNRVFVPVNGPASVDNDALNVYKTAMPGYEIIGVKGASGTPWLGTDALHCRTHEVADKGYLYIKHYPILGEQAGPDYKIEADVVSCANATISPVQCYYRINGSGSFKAADMTMESTGHYTYSFTGLNKNDKVEYYISAADNSGRKETYPFIGEPDPFKFTCMNE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YTB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187522 for 2512 contacts (-74.7/contact) +
2D Compatibility (PS) -31385 + (NN) -9015 + (LL) 2368
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -242004.0 ( -96.34 by residue)
QMean score : 0.420
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