Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSTRIGSKIVMMVCAVVIVISAVMGVIISYKVESVLQSQATELLQKKAQLVSFKIQGIMKRIFMGANTLERFLSDENGAINDTLKRRMLSEFLLANPHVLLVSAIYTNNNERMITAMNMDSKIAYPNTALNENMTNQIHSLKSITRSDPYYKEVNG---DKIYGM------------DITLPLMGKNQNVIGALNFFLNIDAFYTDV-VGKKKSNTFLMGK---DGRILINPNREIQDKILSAINPDKRVAKAVEYYNQN---EAGTLSYHSLSGNTETFLAIQPFDFFEEKGNNGNHWRWAIGKYVNKSLVFKEATNTKFIIITTLILGVLVLAFL----VFIIISNLITKRISRVNNTLNDFFNLL-NNPKNNHAISLTPPSAYDEIGQMQASINENILKTQESIQ-ADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGADIESLNNALEHYKNLDFTHHIQNPKANMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITMIDSKSQEMISQGEDIKSVVDMIRDIA-------DQTNLLALNAAIEAA-RAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADN---AESIKMQNKGVENIHNSINALQQDVQD---NLTIANHSLQVSTKIDGISQDILEDVSKKKF |
| 4RKN Chain:A ((43-702)) | MQMTKEAREIIAHPKGT----KESRGVI-SLQDYIVEEQAMYDWLFKNHPIFT-KYGGKTVGKLVVKDRGEEWIEEGRGNDFSKASKRSGGE-----GFSSMMYRVARNSTLQYPNKFIGPEKCGECHPAQYETWSRSRHAT--TIRFPGEHPEVNNKLNDPVFDKDTASILPQGITPDVVYCTVGHIRTKFGFFDAWLLRGTYHVEGGLLKNGTGQIVAGGNQWQRTWALNLSPEVAKKIKKWVPD---FPVTLEEYGDNGGYVRGLASYAAKYKKSMSFQASTSY------CEVCHPWKF---DFKNESEFYAALGNAKELQKHTISKGVSCEECHGAGGHLEGGSGLLISNCERCHQRFSYSPDLMRNNPLNAGKPDLALSSKFKSMGPGCGSEGSQTYFTAHYEKGMRCATCHDPHDVTGNVTGEKGIKGVSYNSEQGYLSSL---------YSKPKLKKECTDCHKEQAYIQSKADTH-----------SKNSCASCHMPFMMSCENFYAIQFQDQAGFDT-----QRRAHIWKIDVDPARKSLVAGSTSKDPRDGKDW-HFERNEEGRNFVDLMWACARTTWADKDQAEAKGCHSPVVSELKETLHFKDQKQVYNEVMGWQTPVKDKFTQVKVGIQGLYSLLEVKKLAPSDKTRVYELIEKAQDTVDLIEKDGSWGMHGFKYTKQRLDAAVEYINEAQRIMKKSL---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 33673 for 5012 contacts (6.7/contact) +
2D Compatibility (PS) -62500 + (NN) 6291 + (LL) 4480
1D Compatibility (HY) -7200 + (ID) 4950
Total energy: -30206.0 ( -6.03 by residue)
QMean score : 0.129
|
|
|