Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKSVIVGAI--------------SLAMTSLLS-AETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLT-HGALGTRGYKGLSNQQYAINGF---GFVVGYKHFFKKAPQFGMRYYGFFDF-ASSYYKYYTYNDY--------GMRDAR-------KGSQSFMFGY----------GAGTDVLFNPAIFNRENLHFGFFLG--------------VAIGGTSWGPTNYYFKD--LAEEYRGSFH----PSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASAD------NVPE-GTTYRFTFHRPYAFYWRYIVSF |
| 4Q98 Chain:A ((9-365)) | VVETNATVSFIIKSGESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVANHNY-ELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQNYYSFKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNPLTEPALTDAINAGFCDGDGTTYYPVLVNYD-GNGYIYSGAITQGQNKIVRNNHYKISLNITGPGTNTPENPQPVQANLNVTCQVTPWVVVNQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48911 for 2030 contacts (-24.1/contact) +
2D Compatibility (PS) -30448 + (NN) -3780 + (LL) 32
1D Compatibility (HY) -6000 + (ID) 2500
Total energy: -91607.0 ( -45.13 by residue)
QMean score : 0.115
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