Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKY--NLNLEEIQAIYLYITSLGHKDERKDPSKP
1GDV Chain:A ((2-83))
-------------------------DLDNGEKVFSA----NCAACHAGGNNAIMPDKTLK----KDVLEAN-SMNTIDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQSEKGW-------
General information:
TITO was launched using:
RESULT:
Template:
1GDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31205 for 541 contacts (-57.7/contact) +
2D Compatibility (PS) -8487 + (NN) -3182 + (LL) 3152
1D Compatibility (HY) -800 + (ID) 850
Total energy: -41372.0 ( -76.47 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1GDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GDV-query.scw
PDB file :
Tito_Scwrl_1GDV.pdb
: