Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNIN-ESVGALQVLQIACKKLL-NKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDT-QLNIAINDEVFSMIVDNPLNLLENVGGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSNKSLKDLLSDDLRA
3MFN Chain:A ((31-155))
AQEAVIEAKRYLNNAKDI-LRDKGGKED----GFYQDSKYVKMAGHTAYSGVLFALDHYFGKKTKGRKDVDWYKSNLAQQD-KKILNTFVSVYEQLHLVMAYDGVGD---------------------AEVVKLGFQRAEIIIDWVERRLAA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42706 for 901 contacts (-47.4/contact) +
2D Compatibility (PS) -12857 + (NN) -6178 + (LL) 3012
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -63829.0 ( -70.84 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3MFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MFN-query.scw
PDB file :
Tito_Scwrl_3MFN.pdb
: