Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETF--GF--LVEAEVEEFELKDAI-LRLAWRGWNEAKGDEYLE-VYHAWLVEKLDNDRVRILTQESQSGV-PAKALAKSVPNAMLNGHQAWLDGLVAYSR
3TVQ Chain:A ((4-145))
--------------------RTDNSI-VVNAPFELVWDVTNDIEAWPELFSEYAEAEILR--QDGDGFDFRLKTRPDANGRVWEWVSHRV-PDK---GSRTVRAHRVETG----PFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIE
General information:
TITO was launched using:
RESULT:
Template:
3TVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32421 for 903 contacts (-35.9/contact) +
2D Compatibility (PS) -13992 + (NN) 2666 + (LL) 1408
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -41689.0 ( -46.17 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_3TVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TVQ-query.scw
PDB file :
Tito_Scwrl_3TVQ.pdb
: