Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHET-SWDIMLTGLKSGRFDMVANQVSLTTKKRQ-AAFDKSLPYSYSGTIMLVRKDE-NRIKDIRDIKGLKAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNSPFKI-AWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
1II5 Chain:A ((3-226))
-----------------------------AMALKVGVV-GNPPFVFYG---AFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTE-IRV-SLEPYGFVLKEN-SPLQKTINVEMLNLLYSRVIAEFTERWLG------
General information:
TITO was launched using:
RESULT:
Template:
1II5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107797 for 1779 contacts (-60.6/contact) +
2D Compatibility (PS) -23599 + (NN) -13890 + (LL) 2804
1D Compatibility (HY) -12400 + (ID) 2150
Total energy: -157032.0 ( -88.27 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1II5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1II5-query.scw
PDB file :
Tito_Scwrl_1II5.pdb
: