Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAFLNRSFAPLLNPNENLLDQVKSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYANAHSVASKHAILMGMLLKECQEKLKRSLNLSANHCVLSAGYGASSAIKKFQEILGVCIPSKTKKNLEPYLKDMALKRVIVGPYEHHS--NEVSWREGLCEVVRIPLNEHGLLDLEILEQTLKKTPNSLVSVSAASNVTGILTPLKEVSSLCKEYRAILALDLANFSAHANPKDC--EYQTGFYAPHKLLGGVGGCGLLGISKDLIDTQIPPSFSAGGVIKYANR--T-RHEFIDELPLREEFGTPGLLQFYRSALAYQLRDECGLDFIHKKENNLLRVLVYGLKDLPAINIYGNLTASRVG-VVAFNIGG-ISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQKSSDFNAKPGWLRVSL-HFTHSINDIDYLLDSLKKAVKKLR |
| 2CH1 Chain:A ((6-383)) | ------------------PPASLRNPLIIPEKI--MMGPGPSNCSKRVLTAMTNTVLSN--FH-------AELFRTMDEVKDGLRYIFQTENRATMCVSGS-AHAGMEAMLSNLL-EE----------------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQ-VLGAPPGITPISISPKALDVIR-NRRTKSKVFYWDLLLLGNYWG-CYDEPKRY-HHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT--------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CH1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196879 for 3171 contacts (-62.1/contact) +
2D Compatibility (PS) -39620 + (NN) -15983 + (LL) 2744
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -263288.0 ( -83.03 by residue)
QMean score : 0.430
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