Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRG--VPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR |
3E4B Chain:A ((199-393)) | -------------------------------------------------LKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFP-ELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGRE-VAADYYLGQIYRRG---YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3E4B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -55650 for 1526 contacts (-36.5/contact) +
2D Compatibility (PS) -21170 + (NN) -12970 + (LL) 3204
1D Compatibility (HY) 400 + (ID) 2100
Total energy: -88286.0 ( -57.85 by residue)
QMean score : 0.521
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