Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVID---VAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
1CZU Chain:A ((2-167))
--KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEFG
General information:
TITO was launched using:
RESULT:
Template:
1CZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99049 for 1359 contacts (-72.9/contact) +
2D Compatibility (PS) -17552 + (NN) -9832 + (LL) 36
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -144147.0 ( -106.07 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1CZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CZU-query.scw
PDB file :
Tito_Scwrl_1CZU.pdb
: