Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVG------------RVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLL------DYKLLQLFKLFENALFSALYNKVAL
4U6N Chain:A ((8-200))
-----NVQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFP
General information:
TITO was launched using:
RESULT:
Template:
4U6N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64260 for 1253 contacts (-51.3/contact) +
2D Compatibility (PS) -18272 + (NN) -5267 + (LL) 416
1D Compatibility (HY) 1200 + (ID) 1450
Total energy: -87633.0 ( -69.94 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_4U6N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U6N-query.scw
PDB file :
Tito_Scwrl_4U6N.pdb
: