Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYELVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGN---CFKVPEPLIA-KVGARVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIKKAATDSM--GVIAFDE-TREGVFNLLNIYMLLSDESPEKIEERFR-NKGYGDFKKELAEVVIQSLKPIQERYQEISDDE--VKAVLNCGAEKARPLARATYQKAKELMGLI |
| 3SZ3 Chain:A ((4-338)) | MSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTV-NARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZ3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167032 for 2625 contacts (-63.6/contact) +
2D Compatibility (PS) -34503 + (NN) -13423 + (LL) 192
1D Compatibility (HY) -29600 + (ID) 7400
Total energy: -251766.0 ( -95.91 by residue)
QMean score : 0.570
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