Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ---
1A4P Chain:A ((1-92))
-PS-------------QMEHAMETMMFTFHKFAG-----------D---KGYLTKEDLRVLMEKEFPGFLENQKD--PLAVDKIMKDLDQC------RDGKVGFQSFFSLIAGLTIACNDYFVVH----MKQ
General information:
TITO was launched using:
RESULT:
Template:
1A4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5067 for 537 contacts (-9.4/contact) +
2D Compatibility (PS) -9421 + (NN) -6998 + (LL) 2584
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -24852.0 ( -46.28 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1A4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A4P-query.scw
PDB file :
Tito_Scwrl_1A4P.pdb
: