Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----LDYI--------IAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLIIPLSLGESLEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
2SCU Chain:B ((245-385))
AAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN--FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGI--VRCDLIADGIIGAVAEVGVNVPVVVRLE-GNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV
General information:
TITO was launched using:
RESULT:
Template:
2SCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47138 for 1074 contacts (-43.9/contact) +
2D Compatibility (PS) -13762 + (NN) -4253 + (LL) 268
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -69885.0 ( -65.07 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_2SCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SCU-query.scw
PDB file :
Tito_Scwrl_2SCU.pdb
: