Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNAKKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI
4BEM Chain:E ((6-81))
LDFIKACSAIGAGIAM-IAGVGPGIGQGFAAGKGAEAVGRQPEAQSDIIRTMLLGAAVAETTGIYGLIVALILLFANPF-
General information:
TITO was launched using:
RESULT:
Template:
4BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54988 for 437 contacts (-125.8/contact) +
2D Compatibility (PS) -7951 + (NN) -3965 + (LL) -312
1D Compatibility (HY) 4800 + (ID) 300
Total energy: -62716.0 ( -143.51 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_4BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BEM-query.scw
PDB file :
Tito_Scwrl_4BEM.pdb
: