Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQDSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK-------------------------------
4DX8 Chain:H ((13-202))
EDAYVAVIRPKSLNSREYRAKSYEILLHEVPKKVLLETKLQSEITQGILDYVVETTKPINQGIR--GKRVVLMKKFPLDGEKMGREASLFIVPSVVCPIFYCLQDIMRVCTHFATLTARMLI--ALDKWLDERHAQSHFIPALFRPSPLERIKTNVINPAYAT
General information:
TITO was launched using:
RESULT:
Template:
4DX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30524 for 703 contacts (-43.4/contact) +
2D Compatibility (PS) -12087 + (NN) -5208 + (LL) 156
1D Compatibility (HY) -6800 + (ID) 650
Total energy: -55113.0 ( -78.40 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_4DX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DX8-query.scw
PDB file :
Tito_Scwrl_4DX8.pdb
: