Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------------------MEYKNGENRIYAVN-DEGVEVGEVTFVPT-----GEDMFIIDHTGVDDAARGQGIAQELVKRAVEKAKSEGKKIVPLCPFAKAEFSKKPEYQEVEASK---------
1VKC Chain:A ((10-158))
EYTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVL--RVEIDNPAVKWYEERGYKARALIMEKPI
General information:
TITO was launched using:
RESULT:
Template:
1VKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13887 for 551 contacts (-25.2/contact) +
2D Compatibility (PS) -10095 + (NN) -2950 + (LL) -84
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -31316.0 ( -56.83 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1VKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKC-query.scw
PDB file :
Tito_Scwrl_1VKC.pdb
: