Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLLDIKEDVKDVAAKINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLEKAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATG-GGKIVNMASQASVIALDKHVAYCASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAG-QVGEDMKKLIPAGRFGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK
3D3W Chain:B ((11-241))
-----------------LVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-IEPVCVDLGDWEATERALGSVGPV----DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF---
General information:
TITO was launched using:
RESULT:
Template:
3D3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159186 for 1953 contacts (-81.5/contact) +
2D Compatibility (PS) -24468 + (NN) -3030 + (LL) 1600
1D Compatibility (HY) -14800 + (ID) 4100
Total energy: -203984.0 ( -104.45 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3D3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3W-query.scw
PDB file :
Tito_Scwrl_3D3W.pdb
: