Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
5BMX Chain:D ((35-244))
----------------------------------SKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFGNGSYNGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQ-KTIEVITKQVKAFVDLID--NFDNVILVYEPLWA------ATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDII--------
General information:
TITO was launched using:
RESULT:
Template:
5BMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112156 for 1551 contacts (-72.3/contact) +
2D Compatibility (PS) -22073 + (NN) -13574 + (LL) 2764
1D Compatibility (HY) -16800 + (ID) 3650
Total energy: -165489.0 ( -106.70 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_5BMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BMX-query.scw
PDB file :
Tito_Scwrl_5BMX.pdb
: