Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKK--GTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
3OVQ Chain:B ((5-219))
-CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS--LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSE
General information:
TITO was launched using:
RESULT:
Template:
3OVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165160 for 1843 contacts (-89.6/contact) +
2D Compatibility (PS) -23733 + (NN) -16517 + (LL) 152
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -225058.0 ( -122.12 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3OVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OVQ-query.scw
PDB file :
Tito_Scwrl_3OVQ.pdb
: