Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGM--VWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALY--CGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPNELDYEAAALVEPSAVVVH-GFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE |
| 3PII Chain:C ((10-337)) | --------KEPLKIKEVEKPTISY-GEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV-GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA--YNSIRRGGACVLVGLPPEEMPIPIF---DTVLNGIKIIGSIVGTR-----KDLQEALQFAAEGKVK---TIIEVQPLEKINEVFDRML-KGQINGRVVLTLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236395 for 2818 contacts (-83.9/contact) +
2D Compatibility (PS) -33585 + (NN) -3536 + (LL) 1592
1D Compatibility (HY) -24000 + (ID) 5600
Total energy: -301524.0 ( -107.00 by residue)
QMean score : 0.466
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