Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNEG-KVIVKTVESLLAFDYPVDRYEIIVINDNSSDNS-AELLAAIQAKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRF-----IN-IETLSFQ-------WMAQAGRWALFKLCTIPGTNFIVRRSLLEEIGGWDVKAV---AEDTEISFRIYMMGYRIKFQAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAAYGFFIFLKDTVLKRETKWYKTERF |
| 2D7I Chain:A ((109-341)) | ---------------------------------------------ETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPS--VRIL---RTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARN-RKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRK------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D7I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71500 for 1707 contacts (-41.9/contact) +
2D Compatibility (PS) -23852 + (NN) -10887 + (LL) 20476
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -95663.0 ( -56.04 by residue)
QMean score : 0.328
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