Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MEYFLSLLKIIVLLAVL--AGISYFLVKKNKQANRT----------RKSENDLIKLKDTLLISHQLRAVLLEADG-----------------EKVLAIISNNDIRTVSLK---GKNDQNEKLFRELLLKEETKENA------
2HVW Chain:A ((37-183))
NRLSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQHDVPRVKLGE
General information:
TITO was launched using:
RESULT:
Template:
2HVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24235 for 651 contacts (-37.2/contact) +
2D Compatibility (PS) -11074 + (NN) -3021 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -40480.0 ( -62.18 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_2HVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVW-query.scw
PDB file :
Tito_Scwrl_2HVW.pdb
: