Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGM-IAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINK--KSPYRIDKDSLDI
2FMY Chain:A ((23-215))
-----------------VLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYE--DKEFTLAILEAGDIFCT--------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVP--QGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKLKE
General information:
TITO was launched using:
RESULT:
Template:
2FMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97850 for 1327 contacts (-73.7/contact) +
2D Compatibility (PS) -20157 + (NN) -1343 + (LL) 1576
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -126824.0 ( -95.57 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_2FMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FMY-query.scw
PDB file :
Tito_Scwrl_2FMY.pdb
: