Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDYFDEEINIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFVV--NKQKKWLEAVSEVLESRGESEKLG
1KA5 Chain:A ((1-88))
MEQNSYVIID------------ETGIHARPATMLVQTASKFDSDIQLEYNG--------KKVNLKS-IMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK---
General information:
TITO was launched using:
RESULT:
Template:
1KA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16996 for 708 contacts (-24.0/contact) +
2D Compatibility (PS) -9299 + (NN) -943 + (LL) 1624
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -31564.0 ( -44.58 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_1KA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KA5-query.scw
PDB file :
Tito_Scwrl_1KA5.pdb
: