Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILTDYHYVST------------------PKDIPGY-------KLREIPHNATGNITDTGIIVRYIYDKTI--DVRYVDETGKDLLPVVEIINSEAAVLETISD-----YTFVKKDISID---GLHIIFR-YKKNISTIPDFGKPNQVTVNYLDENKTPIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINI-IYQKKAPEQAPSME-PLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVY---LLVQQSQKRRRKE------------------- |
| 1F52 Chain:A ((101-468)) | -DRDPRSIAKRAEDYLRATGIA-----------DTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGD-KYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGY-----EAPVMLAYSARNRSASIRIPVVA-SPKARRIEVRFPDPAA--NPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKE---IPQVAGSLEEALNALDLDREFLKAG-GVFTDEAIDAYIALRRE-EDDRVRMTPHPVEFELYYSV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F52.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16399 for 2567 contacts (6.4/contact) +
2D Compatibility (PS) -31844 + (NN) -5147 + (LL) 1752
1D Compatibility (HY) -2400 + (ID) 2550
Total energy: -23790.0 ( -9.27 by residue)
QMean score : 0.118
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