Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELKHVIPNMEKTFGQLEFAGEGKVEQRRINGKPTILSRSYNLYSNIQRAD---DIVVILPAEAGEKHFEIEQKVKLVNPRITAEGY-----------KIGTRGFTNYVMYA--------DDIVKV---
1PM4 Chain:A ((15-131))
------IPNIATYTGTIQGKG-----EVCIIGNKEGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWG-EIKRNDIDKPLKYEDYYTSGLSWIWKIKNNSSETSNYSLDATVHDDKEDSDVLTKCPV
General information:
TITO was launched using:
RESULT:
Template:
1PM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12055 for 538 contacts (-22.4/contact) +
2D Compatibility (PS) -9233 + (NN) 4672 + (LL) 1284
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -18882.0 ( -35.10 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_1PM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PM4-query.scw
PDB file :
Tito_Scwrl_1PM4.pdb
: