Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE
4PPD Chain:E ((11-96))
-----ALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPR---DVEKILPK---
General information:
TITO was launched using:
RESULT:
Template:
4PPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32055 for 654 contacts (-49.0/contact) +
2D Compatibility (PS) -9226 + (NN) -3387 + (LL) 432
1D Compatibility (HY) -9600 + (ID) 3100
Total energy: -56936.0 ( -87.06 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4PPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPD-query.scw
PDB file :
Tito_Scwrl_4PPD.pdb
: