Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIKDK-EVVKTGMR-REIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLEVKVIPGITASIGAAAVLGAPIMHDFC----HISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYE--LVDMTTVVIVGNKETYVKNGKMITPRGYSL
1VE2 Chain:A ((4-226))
KVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALAKGELVPV----KTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRA--GIPFEVVPGVTSAVGALSALGLPL-THRGLARSFAVATGHD--PA---LPL----PRADTLVLLM-----------GLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLVVGKVVGLYG------------
General information:
TITO was launched using:
RESULT:
Template:
1VE2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138709 for 1611 contacts (-86.1/contact) +
2D Compatibility (PS) -22292 + (NN) -7900 + (LL) 1592
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -174859.0 ( -108.54 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1VE2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VE2-query.scw
PDB file :
Tito_Scwrl_1VE2.pdb
: