Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSDGKT------PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEANKRFDAAK
3K9S Chain:C ((1-205))
-SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK--GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK
General information:
TITO was launched using:
RESULT:
Template:
3K9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69155 for 1575 contacts (-43.9/contact) +
2D Compatibility (PS) -20665 + (NN) -5053 + (LL) -44
1D Compatibility (HY) -20400 + (ID) 6250
Total energy: -121567.0 ( -77.19 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_3K9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9S-query.scw
PDB file :
Tito_Scwrl_3K9S.pdb
: