Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQ----TGGLCPINWQPGEKTIV
4K1F Chain:B ((8-181))
-----INSPAPSFEEVALMPNGSFKKISLSSY--KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHGEVCPANWKKGD----
General information:
TITO was launched using:
RESULT:
Template:
4K1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111492 for 1278 contacts (-87.2/contact) +
2D Compatibility (PS) -18211 + (NN) -5648 + (LL) 1536
1D Compatibility (HY) -18400 + (ID) 4000
Total energy: -156215.0 ( -122.23 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4K1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K1F-query.scw
PDB file :
Tito_Scwrl_4K1F.pdb
: