Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEF-SEVVVKRNDAADLIKIA-ALADGIVLSPGPGKPSDAGLLEEVVAK-FAKEKPLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQT-AGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI
2VXO Chain:A ((31-235))
AVVILDAG--YGKVIDRRVRELFVQSEIFPLET-PAFAIKEQGFRAIIISGGP--------APWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK--------VFNISVDNTCSLFRGLQKEEVVLLTHGDSVD--KVADGFKVVARSG-N-IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQN---
General information:
TITO was launched using:
RESULT:
Template:
2VXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122984 for 1456 contacts (-84.5/contact) +
2D Compatibility (PS) -18141 + (NN) 187 + (LL) 548
1D Compatibility (HY) -10400 + (ID) 2300
Total energy: -153090.0 ( -105.14 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_2VXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXO-query.scw
PDB file :
Tito_Scwrl_2VXO.pdb
: