Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTIVPGEKHIFWTDIKSYMQEDEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDIVANESRVGGVGSTGR
3LQW Chain:A ((29-136))
-------------KKLVEDAI-VPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDV--GAGVIDEDYR------GEIKVILFNHSNEIFNGRKGDRIAQLIIER-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49230 for 760 contacts (-64.8/contact) +
2D Compatibility (PS) -11820 + (NN) -3548 + (LL) 1452
1D Compatibility (HY) -6800 + (ID) 1850
Total energy: -71796.0 ( -94.47 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LQW-query.scw
PDB file :
Tito_Scwrl_3LQW.pdb
: