Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGEKEFRRLEHEKLKELATTKA--VIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRL--KGDTTRPLVQQKTAEEIRAIFEPRIAHYQDSADFIVNTD---NRNQQEVAQTILTMLDK
3N2E Chain:B ((10-161))
MGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMH-ENLKGLGTTF---YLKMDFETLIKRLNQKERAKRPLLNNLT--QAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQFI------
General information:
TITO was launched using:
RESULT:
Template:
3N2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26480 for 971 contacts (-27.3/contact) +
2D Compatibility (PS) -15380 + (NN) -2830 + (LL) 964
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -59426.0 ( -61.20 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3N2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N2E-query.scw
PDB file :
Tito_Scwrl_3N2E.pdb
: