Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEELLKRFTKYVKVDTQSNEESTVCPTTPGQMELANILVTELKEIGMQEVTVD----------------------EFGYVMATLPSNSTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGKDIILNKDLNVVLSPKQFPELAGYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINHPEIKHGKIRIAFTPDEEIGR-GPERFDVEAFGAKYAYTMDGGPLGELEYESFNAASAKITFKGNSVHPGTAKNKMVNAVKMAMEFDARIPKDEAPEY------TEG----YEGFYHLISLNG------DVEQARSYYIIRDFDHLKFVERKTHIASIAKELEEKYG---EGSVELKLND-QYYNMREKIEPVKEIVDIVSAAMRN-LDIEPKISPIRGGTDGAQLS-YKGLPTPNIFGGGENFHGKFEYVALESMVKATEVIIEVARLFEEKE |
3PFO Chain:A ((25-430)) | -FNDQVAFLQRMVQFRSVRGEE----------APQQEWLAQQFADRGYK-VDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATADSD--GKGRSLILQGHIDVVPEGPVDLW---SDPPYEAK-V----------------------RDGWMIGRGA----QDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGNGALSTLMRGYRADACLIPEPTG-HTLTRAQVGAVWFRLRVRGTPVHVA-YSETGTSAILSAMHLIRAFEEYTKELNAQAVRDPWFGQVKNPIKFNVGIIKGGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPAELVWSGFQADPAV--CEPGGVAEDVLTAAHKAAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGPHAFDERIDLESLRKTTLSIALFVAEWCGL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69057 for 3162 contacts (-21.8/contact) +
2D Compatibility (PS) -39088 + (NN) -15642 + (LL) 2496
1D Compatibility (HY) -2400 + (ID) 2800
Total energy: -126491.0 ( -40.00 by residue)
QMean score : 0.490
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