Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQK----VGGFPIALPIDDPS------VAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGSLYQDISQ---VET-KA---L---QHLQ------RVDEQLGSHTIDIEPTSELAKHHP-NKKLVNSLHHQFIK-----KL-APSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMVK |
| 3NVA Chain:A ((309-534)) | ---------------------------YISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGS-RG--A---------------EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPS-NKFFVATQAHPEFKSRP-TNPSPIYLGFIRAVAS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61530 for 1503 contacts (-40.9/contact) +
2D Compatibility (PS) -20438 + (NN) -6115 + (LL) 2912
1D Compatibility (HY) -7200 + (ID) 1550
Total energy: -93921.0 ( -62.49 by residue)
QMean score : 0.348
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