Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAGEEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDV---MPLLEAYDQEIIPFSERE--G-FVSYTERLAK-FYDRP---Y-YPNLTEQIKERGFLGGK
3EOF Chain:A ((1-247))
--GMMDTVKNRRTIRKYQQ-KDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERNAVP-GYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPELVFPITTVTVGYPAESPKQVDRLPIEGIIHEESYHDYTAEDINRLYAYKESLPENKLFIEENQKETLPQVFTDVRYTKKDNEFMSENLLKVLRRQGFM---
General information:
TITO was launched using:
RESULT:
Template:
3EOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146634 for 1720 contacts (-85.3/contact) +
2D Compatibility (PS) -25760 + (NN) -10040 + (LL) -204
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -195238.0 ( -113.51 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3EOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EOF-query.scw
PDB file :
Tito_Scwrl_3EOF.pdb
: