Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MQSVFEDLYSKKILEEEFGYTCFLQTLIDNRIPYKKTRIPSNMILLTEDTINTKVYFIEKGIVSLEKNKN------VISFLGSNQIAGLNDYFMAEANLYTARVI-ETIT-AYEFDKEDIICSIIGMQEGWLYLYLNNRNHENVLIEKCNL-MRGNGENRLK-ESLEQLGR-YFGNEKEGVLRIPKCFTKKIIANYSNLSVRSVTHLCRKLVEAGFLAENSKSFVLLDKYGKIEPEVTTI
4RFA Chain:A ((10-225))
EKLDTVLGYLKEFPDYYKY----------------VTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAF---SSYPKHSITVMSESLMLYKID-ADFLLNILSIKPDVNDFLLTSIADVFARHYALLGMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRIDKDSLD--------
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72592 for 1381 contacts (-52.6/contact) +
2D Compatibility (PS) -21504 + (NN) -5078 + (LL) 2348
1D Compatibility (HY) -10400 + (ID) 1450
Total energy: -108676.0 ( -78.69 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: