Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYY-VKVEDAGKPVQKNQFK-GFKYVSNVYDDKGKQKQLTFYSEKELTK-NEQFKVLVGENKMVVNYKKIKN-----VPDKIKYLAEK-
3DT5 Chain:A ((15-133))
RLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRV-LPMHFKFK---ADKIAGSANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK
General information:
TITO was launched using:
RESULT:
Template:
3DT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19835 for 726 contacts (-27.3/contact) +
2D Compatibility (PS) -11067 + (NN) -3790 + (LL) 204
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -41488.0 ( -57.15 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_3DT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DT5-query.scw
PDB file :
Tito_Scwrl_3DT5.pdb
: