Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRL-KLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKA---GVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGARVMSLQ--DPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITG-----ETIASIEEKYVGKGYGDFKT--DLAELVVSELEPIQERYYAYLKSEELDTILDAGAEKAAR---VANKTLKKMENGVGLGRKRRK |
| 1YID Chain:B ((25-348)) | ----VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQA----QLSRVPRLPGLDGQAKMSKS---LGNAIALGDSADEVARKVMGMYTDPGHL----RASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEY--ERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118761 for 2450 contacts (-48.5/contact) +
2D Compatibility (PS) -33020 + (NN) -11387 + (LL) 1592
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -184826.0 ( -75.44 by residue)
QMean score : 0.478
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