Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----------MSGIQWIKLSVNMFDDEKIKLLEKMPEGNQML--IVWIRL------LALAGKTN-----DKGRIYLNENVPYTEDMLATLFNRDVGIIRVTLHTLQSFGMIQKTEN---------GLIEIE---------NWEKHQNVDG------------MERVREQ----TRKRVEKHREAMRQNR-------------IASGDSKGNKE-------------CNVTSSVTVTQSNAI---------DIDKELDKDINNNNSDLNFKDF-WEQNGFGMMLPVELEKLLA--WVDDFA-------GNREIVMKALEVTSEQGANKRNYA-----------YVNKILKNWESRGFKTIADVDAAEKQRQIELEQKYNKPTYNKYNK-----PVKEEVLPDWFDKDQKQTKQETSTT----GSSEDLEKQVAEIKAQLAARNEVQA---------- |
4P42 Chain:A ((3-470)) | DTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTHLSTFSFTKVDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYF-CRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLDKVLTDIGLSSALLILYLDSARNLPSSSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRDEQHQCSLGNLKVPLSQLLTSEDMTVSQRFQLSNSGPNSTIKMKIALRVLHLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P42.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 59267 for 1891 contacts (31.3/contact) +
2D Compatibility (PS) -33666 + (NN) 10793 + (LL) 204
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: 25498.0 ( 13.48 by residue)
QMean score : 0.153
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