Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSD---VTIDLNNPTCGDQIHLHLKMD-GDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK---------
1Q48 Chain:A ((1-134))
-------MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELP-------------------PVKVHCSILAEDAIKAAIADYKAKQGLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
1Q48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25738 for 816 contacts (-31.5/contact) +
2D Compatibility (PS) -13380 + (NN) -8568 + (LL) 1892
1D Compatibility (HY) -4400 + (ID) 1950
Total energy: -52144.0 ( -63.90 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1Q48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q48-query.scw
PDB file :
Tito_Scwrl_1Q48.pdb
: