Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRTAQKKGEDFVVFFFTPMCGSCQIASRLVDVVIEADGIQTEVAKVNLNYVPDIAQSLEITSVPALVKFKNGQPADLSYQLHDATAIFEFLYSE
2YOI Chain:B ((23-87))
-----------VVDFFATWCGPCKMIAPFFEELSEEYPDKVVFIKVDVDEVPDVAAKYGITSMPTFKFFKNGKKVD------------------
General information:
TITO was launched using:
RESULT:
Template:
2YOI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56117 for 375 contacts (-149.6/contact) +
2D Compatibility (PS) -6920 + (NN) -752 + (LL) 2468
1D Compatibility (HY) -6000 + (ID) 1150
Total energy: -68471.0 ( -182.59 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2YOI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YOI-query.scw
PDB file :
Tito_Scwrl_2YOI.pdb
: