Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMK--FMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK
1BD4 Chain:B ((48-242))
---------------MTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT-
General information:
TITO was launched using:
RESULT:
Template:
1BD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129185 for 1442 contacts (-89.6/contact) +
2D Compatibility (PS) -20737 + (NN) -5417 + (LL) 1388
1D Compatibility (HY) -15200 + (ID) 3400
Total energy: -172551.0 ( -119.66 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_1BD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD4-query.scw
PDB file :
Tito_Scwrl_1BD4.pdb
: