Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTANQMER----KKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE
1JOP Chain:A ((1-155))
MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENG--RHDINDQIYMNVMEPK----AELHHEYLDVQVLIR--GTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPK-----MFAVFYPYEPHKPCCVIKKLVVKVPVKLI
General information:
TITO was launched using:
RESULT:
Template:
1JOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1738 for 988 contacts (-1.8/contact) +
2D Compatibility (PS) -13971 + (NN) 4055 + (LL) 416
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -17588.0 ( -17.80 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_1JOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOP-query.scw
PDB file :
Tito_Scwrl_1JOP.pdb
: