Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKAVGLTKAST---DFV-DIEIDKPVPENHDLLVKIKAISINPVDTKQREAAKLS-GEEVRILGWDAVGEVVDTGSEVTLFQTGQDVYFAGDVTRPGVYAEYTLIDERLVGLKPHNLNVEEAAAMPLTTITAWEALFDRLTITENDKGKSILIINGAGGVGSIATQLAANTGLEVIATASRSETVEWTKSHGANYVINHREN-IPEQLEELG-FKKGVDFILCLHNTSAHWDEMQEAIRPQGKICSIVELTEP-VEMTLLKDKSATF-SYEFMFTRSKYDTADKIRQHEILTEAAHMLDKGNLTTT-LNQVLSPVNAATIEEAHKIISSG-KMIGKLVVKGFE |
| 3GMS Chain:A ((3-330)) | GKLIQFHKFGNPKDVLQVEY-KNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLR---GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQ---RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGI-GADAAIDS-IGGPDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIFHLRHW-NDE-VSPYKWQETFRHLIRLVENEQLRFMKVHSTY-EL--ADVKAAVDVVQSAEKTKGKVFLTSY- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138762 for 2658 contacts (-52.2/contact) +
2D Compatibility (PS) -34307 + (NN) -8718 + (LL) 492
1D Compatibility (HY) -12400 + (ID) 3100
Total energy: -196795.0 ( -74.04 by residue)
QMean score : 0.498
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