Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFPEDGLIKIGHFVLS--EKNIWEIRRQVGMVFQNPDNQFVGATVQDDVAFG-LENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFA----DRVIVMNKGEIHSEGTPKEIFQQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLNSNN |
4YMU Chain:A ((17-231)) | ----------------------LKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQH-FNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQL-ANEGMTMVVVTHEMG---FAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNER-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107696 for 1607 contacts (-67.0/contact) +
2D Compatibility (PS) -23023 + (NN) -9758 + (LL) 5372
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -155205.0 ( -96.58 by residue)
QMean score : 0.460
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