Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKD-GFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4W5H Chain:A ((6-216))
MNLLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFH-----P-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNL
General information:
TITO was launched using:
RESULT:
Template:
4W5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76469 for 1477 contacts (-51.8/contact) +
2D Compatibility (PS) -22700 + (NN) -14476 + (LL) 188
1D Compatibility (HY) -22400 + (ID) 6000
Total energy: -141857.0 ( -96.04 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4W5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W5H-query.scw
PDB file :
Tito_Scwrl_4W5H.pdb
: